Flow cytometry on a chip

To be published in “Point of Care Diagnostics on a Chip”

2013

Handheld flow cytometer for rapid pathogen characterization in water

2012 Materials Research Society Fall Meeting

25 November 2012

Micro-fluidic based detection platform for rapid pathogen characterization in water

Frontiers in Optics 2012 and Laser Science XXVIII

14 October 2012

Time encoded multicolor fluorescence detection in a microfluidic flow cytometer

Lab on a Chip

2012

Opto-fluidic detection system enabling sophisticated point-of-care diagnostics

Invited Seminar, Stanford Optical Society, Stanford University

5 April 2012

Opto-fluidic detection system enabling sophisticated point-of-care diagnostics

First Annual SLAS (Society for Laboratory Automation and Screening) Conference and Exhibition

4 February 2012

Two-dimensional target decoy strategy for shotgun proteomics

Journal of Proteome Research

20 October 2011

Opto-fluidic detection system enabling sophisticated point-of-care diagnostics

IEEE/Photonics Society Winter Topicals 2011

10 October 2011

Ubiquitous meeting facilitator with playful real-time user interface

IEEE Conference on Ubiquitous Intelligence and Computing

2 September 2011

Recent developments in quantitative proteomics

Mutation Research - Genetic Toxicology and Environmental Mutagenesis

17 June 2011

Preview: a program for surveying shotgun proteomics tandem mass spectrometry data

Analytical Chemistry

28 May 2011

Detecting the fluorescence emission wavelength using a spatially modulated color mask in a compact flow cytometer platform

CYTO 2011

20 May 2011

On-the-flow pathogen detection in water

SPIE Defense, Security and Sensing Symposium 2011

25 April 2011

Constrained de novo sequencing of peptides with applications to conotoxins

Research in Computational Molecular Biology (RECOMB 2011)

28 March 2011

Comment on “Unbiased statistical analysis for multi-stage proteomic search strategies”

Journal of Proteome Research

February 2011

Spatially modulated emission advances point-of-care diagnostics

Laser Focus World

November 2010

Facilitating meetings with playful feedback

Extended Abstracts of CHI 2010

10 April 2010

Conversion of methionine to homocysteic acid in heavily oxidized proteomics samples

Rapid Communications in Mass Spectrometry

30 March 2010

Reanalysis of tyrannosaurus rex mass spectra

Journal of Proteome Research

September 2009

Elucidating in vivo structural dynamics in integral membrane protein by hydroxyl radical footprinting

Molecular & Cellular Proteomics

2009

Glycan family analysis for deducing N-glycan topology from single MS

Bioinformatics

1 February 2009

Quantifying protein interface footprinting by hydroxyl radical oxidation and molecular dynamics simulation: application to Galectin-1

Journal of the American Society of Mass Spectrometry

November 2008

Origami embedding of piecewise-linear two-manifolds

LATIN 2008 Proceedings

7 April 2008

Escape: a target selection technique for mobile touch-screen devices

CHI 2008

5 April 2008

Spectrum fusion: using multiple mass spectra for de novo peptide sequencing

Research in Computational Molecular Biology

30 March 2008

Enthalpy array analysis of enzymatic and binding reactions

Analytical Biochemistry

June 2008

Automated N-glycopeptide identification using a combination of single- and tandem-MS

Journal of Proteome Research

October 2007

Improved ranking functions for protein and modification-site identifications

International Conference on Research in Computational Molecular Biology (RECOMB 2007)

21 April 2007

Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

Analytical Chemistry

23 January 2007

Data mining for proteins characteristic of clades

Nucleic Acids Research

September 2006

Automatic determination of O-glycan structure from fragmentation spectra

Journal of Proteome Research

1 June 2006

De novo analysis of peptide tandem mass spectra by spectral graph partitioning

Journal of Computational Biology

March 2006

Automatic selection of representative proteins for bacterial phylogeny

BMC Evolutionary Biology

May 2005

Avoiding local optima in single particle reconstruction

RECOMB 2005

14 May 2005

EigenMS: de novo analysis of peptide tandem mass spectra by spectral graph partitioning

RECOMB 2005

14 May 2005

Automatic quality assessment of peptide tandem mass spectra

Twelfth International Conference on Intelligent Systems for Molecular Biology (ISMB 2004)

31 July 2004

A global approach to automatic solution of jigsaw puzzles

Computational Geometry

June 2004

Automatic classification of protein crystallization images using a curve tracking algorithm

Journal of Applied Crystallography

April 2004

Model-based particle picking for cryo-electron microscopy

Journal of Structural Biology

January 2004

Flipping cubical meshes

Engineering with Computers

31 December 2002

An image signature for any kind of image

IEEE International Conference on Image Processing (ICIP 2002)

22 September 2002

A global approach to automatic solution of jigsaw puzzles

Proceedings of the 18th Annual ACM Symposium on Computational Geometry

5 June 2002

Paper position sensing

ACM Symposium on Computational Geometry

5 June 2002

Document image matching and annotation lifting

Sixth International Conference on Document Analysis and Recognition

10 September 2001

Trustworthy paper documents

Information Hiding Workshop

25 April 2001

Computing the depth of a flat

12th Annual ACM/SIAM Symposium on Discrete Algorithms

7 January 2001

Secure notarization of paper text documents

Twelfth Annual ACM-SIAM Symposium on Discrete Algorithms

7 January 2001

Model-based document image improvement

Proceedings of the 2000 International Conference on Image Processing

10 September 2000

Multivariate regression depth

ACM Symposium on Computational Geometry.

12 June 2000

Regression depth and center points

Discrete & Computational Geometry

April 2000

Surface reconstruction by Voronoi filtering

Discrete & Computational Geometry

December 1999

Art shows at PARC

Art and Innovation; the Xerox PARC Artist-in-Residence Program

August 1999

Optimal point placement for mesh smoothing

Journal of Algorithms

February 1999

Pushing disks together - the continuous motion case

Discrete & Computational Geometry

December 1998

Regression depth and center points

Stanford Computer Science Department Seminar

7 October 1998

A new Voronoi-based surface reconstruction algorithm

SIGGRAPH 1998

19 July 1998

Surface reconstruction by Voronoi filtering

Annual Symposium on Computational Geometry

7 June 1998

Crust and the beta-skeleton: combinatorial curve reconstruction

Graphical Models and Image Processing

2 March 1998

Pushing disks together - the continuous motion case

Symposium on Theory of Computing

22 May 1997

Optimal point placement for mesh smoothing

Eighth Annual ACM-SIAM Symposium on Discrete Algorithms

20 January 1997

Linear-size nonobtuse triangulation of polygons

Discrete and Computational Geometry.

13 November 1995